PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019998-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 255aa    MW: 28833.7 Da    PI: 9.5007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019998-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1475127155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    ++ +hn+ Er RR+++Ns ++ Lr+llP+ +   + +K s  +++ ++ +YI +Lq
  NNU_019998-RA  75 KKLNHNASERDRRKKMNSLYSSLRSLLPEtD---QTTKQSIPATVSRVLKYIPELQ 127
                    6789*************************77...*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.11374126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-1375141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1475143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-475131No hitNo description
PfamPF000101.1E-1175127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-980132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLSLSPQFSI LGWPSEADTS PEQKSWMSDN PFVNCNFREK QASESFFLFT SSRPEAECNE  60
FKSCGTTSRD PAMVKKLNHN ASERDRRKKM NSLYSSLRSL LPETDQTTKQ SIPATVSRVL  120
KYIPELQKRV ERLKQRKQEI LSSITRHRDH NHQEKRRKAT VQTSSPTVSA SRAGDGEIVI  180
QICAVKVKKS PLSEVLLHLE QEGLQVLNAS AFATFGETAF YNLHLQVWAR SEFPNTVIPN  240
KEETTVPGPD ILVAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276688.11e-168PREDICTED: transcription factor ORG2-like
TrEMBLA5C2W43e-74A5C2W4_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g05300.t012e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-52bHLH family protein